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  • OSCAR server
    An online interactive tool for clustering analysis, and cross-species analysis of microarray data.


     

  • GibbsModule
    Multispecies de novo identification of cis-regulatory motifs and modules.


     

  • RPS program
    An R package for selection of the differentially expressed genes from microarray data. Unlike other programs, it considers the inter-laboratory measurement variability in the selection procedure and aims to deliver more reproducible results.
     

  • GoSurfer software
    Windows-based software for searching and visualizing Gene Ontology terms that are enriched in gene sets obtained by microarray studies. It can be activated from dChip software to perform downstream analysis. See application example in gene expression analysis of bipolar disorder:


     

  • Pathwayfindr
    A web application to map genes onto signaling pathways.

     

  • ChipInfo software
    Windows-based software for retrieving online data from NetAffx and Gene Ontology databases. It re-organizes these data into Gene Information Files for dChip and GoSurfer.
     

  • Ubiquitous Bio-Information Computing project (UBIC)
    Protocol and middleware solution for heterogeneous data management. It also provides a C# bioinformatics programming library. It is implemented with XML and .Net technologies.
     

  • TagSmart web software
    Web software for analysis and visualization of yeast mutant fitness data measured by TAG microarrays.